Our “Wellness Resources” series in Archways highlights outside initiatives supported by Rice ARCHES researchers.
Inside the Chrysalis
This month Dr. Michelle Quist is invited by Dr. Angie LeRoy, a post-doctoral Research Fellow on our team in the Department of Psychological Sciences, to discuss the mental wellness podcast that they are working on together.Dr. Quist is an Assistant Teaching Professor in the Department of Psychology at Penn State University and Founder of the Inside the Chrysalis podcast.
Have you ever felt the urge to fundamentally change in
positive ways? To outgrow bad habits and establish positive ones? We all have
at one level or another, but we always run up against the same problem – growth
is hard.
We learn in elementary school about the metamorphosis of the
caterpillar; the ravenous insect that cocoons itself inside a chrysalis before
eventually emerging as a beautiful butterfly. For us, this process becomes the
symbol of the growth and transformation for which we all strive. The aspect we
never discuss, however, is the magnitude of what is happening inside the
chrysalis. The caterpillar has to break itself down to its most basic elements
before reforming as an entirely new creature. That messy, chaotic process is
the inspiration for our podcast, Inside
the Chrysalis.
The creators of Inside
the Chrysalis are four social psychologists, people who study humans and
how they relate to each other. Our goal is to use our expertise to shed some
light on the transformation process and to help people connect with each other
in the context of shared experiences. Throughout our first season, we will
discuss common issues such as achieving an important milestone and then feeling
unexpected dissatisfaction or persistent imposter syndrome, or the anxiety that
can arise from comparing yourselves to other people. We invite people from a
variety of expertise and industry to candidly discuss what research has to say
about our collective experience, establishing a place for pause, growth,
reflection, and connection.
Scientists have turned the structure of the coronavirus into music
Thursday, April 23, 2020
Our third journal club is online! Feel free to join the discussion remotely in the comments below. One of our participants in Project CHROMA suggested the following research that combines science and music to study the coronavirus:
Vineeth Venugopal (2020) “Scientists have turned the structure of the coronavirus into music,” Science 10.1126/science.abc0657.
Researchers at MIT have created a musical representation of the amino acid sequence and structure of the COVID-19 spike protein (based on protein data bank entry 6VSB published by Wrapp et al. 2020) using a technique known as sonification.
The team led by Markus Buehler transposed the vibrational frequencies of the 20 natural amino acids to an audible spectrum in order to assign a musical note to each amino acid, thus creating a 20-tone “amino acid scale.” To create the COVID-19 spike protein musical score, the notes were played on a Japanese koto. The volume and duration of each note were defined by the secondary and higher-order folded structure of the protein. Heat-induced molecular vibrations were represented by unique sounds as well. A neural network was then used to generate music compositions that captured the relationships between amino acid sequence and protein structure.
It’s apparently faster using this technique rather than traditional molecular dynamics modeling to search for sites where antibodies or drugs could bind on the viral protein — researchers simply have to compare the musical scores of the sonified structures.
This musical technique is also a great way to communicate the significance of protein sequences and their folded structure to the public!
Read more about this sonification method developed by the research team:
Chi-Hua Yu, Zhao Qin, Francisco J Martin-Martinez, and Markus J Buehler (2019) “A Self-Consistent Sonification Method to Translate Amino Acid Sequences into Musical Compositions and Application in Protein Design Using Artificial Intelligence,” ACS Nano, 13(7): 7471-7482.
Houston Methodist Center for Performing Arts Medicine
Check out this message from CPAM’s Director, J. Todd Frazier, regarding the 3rd installment of their Virtual Art Experiences and Strategic Information for Artists:
Houston Methodist Center for Performing Arts Medicine
Check out this message from CPAM’s Director, J. Todd Frazier:
I invite you to participate in our hospital IRB (Internal Review Board) approved survey (PRO#00023826), helping us add to the growing base of information supporting elements or parameters of music composition that lead to relaxation.
Why is this important?
In times like this, where anxiety and stress is rising to unprecedented levels for the general population and especially for healthcare providers, we want to be able to use music in the most effective way to support each other.
We still have a lot to learn about how best to do this, especially for large groups of people we don’t have the opportunity to get to know personally. This survey, and its published results, will help us, and the field of arts in health, make even better decisions on how to use the beauty and mystery of music to respond to health challenges and improve wellbeing.
Click here to help CPAM by taking the survey (have some good headphones ready for the music):
All the music examples of this survey are performed by the study Principal Investigator, Dr. Mei Rui and if you are interested in learning more details about the survey, please see the attached Recruitment Letter.
When the survey is complete, you will be directed to Dr. Rui’s full list of musical performances created for relaxation at: https://soundcloud.com/user-390883826
Posted in COVID-19, Resources | Comments Off on Musical Relaxation Survey
Importance of Regulating Stress, Social Support, and Sleep during COVID-19
A collection of news articles featuring Project CHROMA Principle Investigator, Dr. Christopher Fagundes, on the importance of regulating stress, social support, and sleep to make you less prone to COVID-19.
Posted in COVID-19, News, Resources | Comments Off on Importance of Regulating Stress, Social Support, and Sleep
Houston Methodist Center for Performing Arts Medicine
Check out this message from CPAM’s Director, J. Todd Frazier, regarding the 2nd installment of their Virtual Art Experiences and Strategic Information for Artists:
The Center for Performing Arts Medicine is responding to the unique challenges presented by Covid-19 by deploying the arts in creative ways to support the Houston Methodist Hospital and beyond. Drawing from these programs, we encourage you to consider using music for wellness in the variety of ways described in this letter. I have also added new links to local arts organizations for Virtual Art Experiences and local and national links for Strategic Information for Artists and Arts Organizations.
Virtual Art Experiences
For this Installment, I have highlighted some local music ensembles that have adapted their web sites to more easily share music:
Houston Methodist Center for Performing Arts Medicine
Check out this message from CPAM’s Director, J. Todd Frazier, regarding the 1st installment of their Virtual Art Experiences and Strategic Information for Artists:
The Center for Performing Arts Medicine at Houston Methodist understands that the arts are an integral part of the human experience at all times-especially now. We’ve compiled a list of resources below that you may find helpful, both as art experiences for all and as timely information for artists and arts organizations in response to challenges presented by Covid-19.
Virtual Art Experiences
While practicing social distancing, allow yourself some time to exercise creativity and learn something new with Google Arts and Culture. This free, online platform utilizes high-resolution image technology for individuals to virtually tour museums and access art across the world from wherever you are.
What do stress, loneliness and lack of sleep have in common? They are all factors that can weaken your immune system and make you more susceptible to COVID-19, according to Rice University’s Christopher Fagundes, an associate professor in the department of psychological sciences who studies the link between mental and immune health.
“In my field, we have conducted a lot of work to look at what predicts who gets colds and different forms of respiratory illnesses, and who is more susceptible to getting sick,” Fagundes said. “We’ve found that stress, loneliness and lack of sleep are three factors that can seriously compromise aspects of the immune system that make people more susceptible to viruses if exposed. Also, stress, loneliness and disrupted sleep promote other aspects of the immune system responsible for the production of proinflammatory cytokines to over-respond. Elevated proinflammatory cytokine production can generate sustained upper respiratory infection symptoms.”
And while this previous research has centered on different cold and upper respiratory viruses, he said “there is no doubt” that these effects would be the same for COVID-19.
Previous studies have indicated that healthy, nonimmunocompromised people who spend less time around others and are exposed to the cold virus are significantly more likely to get sick and experience worse symptoms than those people who get out and socialize.
Fagundes said this can be explained by the way positive emotions buffer against stressors and evoke a favorable immune response, even while extroverted individuals are more likely to be around more people, possibly those who are carrying germs that could make them sick.
It’s an interesting paradox during the global COVID-19 pandemic, Fagundes said, when people are strongly encouraged and in some places required to stay at home to prevent the further spread of the virus.
Another major factor that impacts immune health is sleep deprivation, Fagundes said, which he noted has been demonstrated over and over in previous study of the topic.
“The overwhelming consensus in the field is that people who do not consistently get a good night’s sleep — 7-9 hours for adults, with variation on what is optimal — makes a person more likely to get sick,” he said.
Fagundes said that although alcohol use, certain jobs and other factors make some people more likely to have poor sleep, psychological stress has a tremendous impact on a person’s quality of sleep.
“It’s important also to note that when we talk about stress, we mean chronic stress taking place over several weeks, not a single stressful incident or a few days of stress,” Fagundes said. “An isolated stressful incident does not seem to make a person more susceptible to a cold or the flu.”
However, even absent of poor sleep, chronic stress alone is disruptive enough to the immune system to make people more likely to get sick, Fagundes said.
“Without question, previous work on this topic clearly demonstrates that chronic stress affects our immune system in a way that makes us more susceptible to viruses and colds,” he said. “Just think about college students who get sick after weeks of stress while studying for a big exam.”
Fagundes said the best ways to mitigate the harmful health effects of loneliness and stress during the COVID-19 pandemic are to stay connected with others through communication, particularly video calls.
“There is some evidence that it may be better to video conference versus having a regular phone call to reduce feelings of isolation,” he said. “There’s something about chatting with people and having them visually ‘with’ you that seems to be more of a buffer against loneliness.”
Fagundes also noted that it is important to keep a routine during stressful times.
“This will regulate your sleep and allow you to focus on immediate goals and plans,” he said. “In turn, you will overthink things less and feel more accomplished.”
And if you find yourself worrying nonstop about the situation, it can be helpful to set aside specific “worry times,” Fagundes said.
“People often worry and overthink things because their brain is telling them there is something to solve,” he said. “However, it can be counterproductive after a while. A good technique is to set aside 15 minutes a day where you allow yourself to worry, preferably with a pen and paper. After that, you aren’t allowed to think about the issue for the rest of the day.”
Fagundes said it is also sometimes helpful for people to identify inaccurate thoughts that reinforce negative thinking and emotions.
“People often convince themselves that a situation is much worse than it is by telling themselves things that are not true,” he said. “We call these cognitive distortions. For example, it is common to catastrophize a situation by convincing themselves that the worst-case scenario is the most likely scenario. When people learn to identify and then refute these thoughts, they often feel much better.”
Posted in COVID-19, News | Comments Off on How stress and loneliness can make you more likely to get COVID-19
Systematically Improving Espresso: Insights from Mathematical Modeling and Experiment
Thursday, March 19, 2020
Our second journal club was moved online! Feel free to join the discussion remotely in the comments below. Josh Hill from the department of Physics & Astronomy suggested the following paper that combines science and the culinary arts:
Michael Cameron, Dechen Morisco, Daniel Hofstetter, Erol Uman, Justin Wilkinson, Zachary Kennedy, Sean Fontenot, William Lee, Christopher Hendon, and Jamie M. Foster (2020) “Systematically Improving Espresso: Insights from Mathematical Modeling and Experiment,” Matter2(3):631-648.
The coffee industry is huge! In the U.S. alone, it provided 1.5 million jobs and accounted for 1.6% of the gross domestic profit in 2015. Espresso is the trickiest coffee beverage format in terms of maintaining a consistent yield and desirable flavor. The goal of this project was to develop a mathematical model of espresso extraction in order to optimize the espresso parameters at play for a reduction of the variation in taste and waste!
These espresso parameters are:
grind setting
coffee mass
water pressure and temperature
beverage volume
The model determined that variation in espresso drinks was not due to human variation, but rather due to non-uniform flow during espresso extraction related to coffee grind size. The team determined a critical minimum grind size that would homogenize the flow, increase extraction yield, and reduce drink variability. Interestingly, the extraction yield had a non-linear dependence on grind setting — this was attributed to a competing relationship between a finer grind leading to an increase in flow but also an increase in grind aggregation leading to partial clogging conditions that affect the flow.
Typically, 20g of dry coffee mass is used to make a single 40g espresso shot. However, the research team demonstrated that a barista can achieve highly reproducible espresso with the same 40g extraction yield by reducing the coffee mass to 15gand using a counter-intuitively coarser grind!
The mass reduction suggestions were implemented at a local cafe in Eugene, Oregon. Espresso drinks were prepared with 15g of specialty-grade coffee, rather than 20g. Firstly, there was a reduced order-to-delivery time since the shot brewing time was 14s rather than 20-30s. Secondly, the research team calculated that the cafe had saved $0.13 per drink given the lower coffee dry mass being used. This amounted to an increase in profit of $3,620 per year!
To summarize: The multi-scale mathematical model of espresso extraction enabled an understanding of the origin of the variation in espresso drinks. The research team made suggestions to minimize drink variation and dry coffee waste: (1) reduce the dry coffee mass used and (2) increase the grind size. Espresso yield and taste were both preserved, while the shot brewing time became faster.
These novel, model-based brewing protocols will contribute to creating a more sustainable coffee-consuming future!